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2018

Atanbori, John, Chen, Feng, French, Andrew P. and Pridmore, Tony P. (2018) Towards low-cost image-based plant phenotyping using reduced-parameter CNN. In: CVPPP 2018: Workshop on Computer Vision Problems in Plant Phenotyping, 6 Sept 2018, Newcastle upon Tyne, UK.

Pridmore, Tony P., Gibbs, Jonathon, Pound, Michael P., French, Andrew P., Wells, Darren M. and Murchie, Erik H. (2018) Plant phenotyping: an active vision cell for three-dimensional plant shoot reconstruction. Plant Physiology . ISSN 1532-2548 (In Press)

Janes, George, von Wangenheim, Daniel, Cowling, Sophie, Kerr, Ian D., Band, Leah R., French, Andrew P. and Bishopp, Anthony (2018) Cellular patterning of Arabidopsis roots under low phosphate conditions. Frontiers in Plant Science . ISSN 1664-462X (In Press)

Xu, Liming, Towey, Dave, French, Andrew P., Benford, Steve, Zhou, Zhi Quan and Chen, Tsong Yueh (2018) Enhancing supervised classifications with metamorphic relations. In: 3rd International Workshop on Metamorphic Testing - MET '18, 27 May 2018, Gothenburg, Sweden.

2017

Xu, Liming, French, Andrew P., Towey, Dave and Benford, Steve (2017) Recognizing the presence of hidden visual markers in digital images. In: Thematic Workshops of ACM Multimedia 2017, 23-27 October, 2017, Mountain View, California, USA.

Pound, Michael P., Atkinson, Jonathan A., Wells, Darren M., Pridmore, Tony P. and French, Andrew P. (2017) Deep learning for multi-task plant phenotyping. In: ICCV 2017 International Conference on Computer Vision, 22-29 October, 2017, Venice, Italy.

Lowe, Amy, Harrison, Nicola and French, Andrew P. (2017) Hyperspectral image analysis techniques for the detection and classification of the early onset of plant disease and stress. Plant Methods, 13 . 80/1-80/12. ISSN 1746-4811

Pound, Michael P., Atkinson, Jonathan A., Townsend, Alexandra J., Wilson, Michael H., Griffiths, Marcus, Jackson, Aaron S., Bulat, Adrian, Tzimiropoulos, Georgios, Wells, Darren M., Murchie, Erik H., Pridmore, Tony P. and French, Andrew P. (2017) Deep machine learning provides state-of-the-art performance in image-based plant phenotyping. GigaScience, 6 (10). pp. 1-10. ISSN 2047-217X

Darrow, Michele C., Luengo, Imanol, Basham, Mark, Spink, Matthew C., Irvine, Sarah, French, Andrew P., Ashton, Alun W. and Duke, Elizabeth M.H. (2017) Volume segmentation and analysis of biological materials using SuRVoS (Super-region Volume Segmentation) workbench. Journal of Visualized Experiments (126). e56162/1-e56162/13. ISSN 1940-087X

Pound, Michael P., Fozard, Susan, Torres Torres, Mercedes, Forde, Brian G. and French, Andrew P. (2017) AutoRoot: open-source software employing a novel image analysis approach to support fully-automated plant phenotyping. Plant Methods, 13 (1). 12/1-12/10. ISSN 1746-4811

Burrell, Thomas, Fozard, Susan, Holroyd, Geoff H., French, Andrew P., Pound, Michael P., Bigley, Christopher J., Taylor, C. James and Forde, Brian G. (2017) The Microphenotron: a robotic miniaturized plant phenotyping platform with diverse applications in chemical biology. Plant Methods, 13 (10). pp. 1-20. ISSN 1746-4811

Luengo, Imanol, Darrow, Michele C., Spink, Matthew C., Sun, Ying, Dai, Wei, He, Cynthia Y., Chiu, Wah, Pridmore, Tony, Ashton, Alun W., Duke, Elizabeth M.H., Basham, Mark and French, Andrew P. (2017) SuRVoS: Super-Region Volume Segmentation workbench. Journal of Structural Biology . ISSN 1095-8657 (In Press)

2016

Luengo, Imanol, Basham, Mark and French, Andrew P. (2016) Selective labeling: identifying representative sub-volumes for interactive segmentation. Lecture Notes in Computer Science, 9993 . pp. 17-24. ISSN 0302-9743

Luengo, Imanol, Basham, Mark and French, Andrew P. (2016) SMURFS: superpixels from multi-scale refinement of super-regions. In: British Machine Vision Conference (BMVC 2016), 20-22nd Sept 2016, York, UK.

Gibbs, Jonathon, Pound, Michael P., French, Andrew P., Wells, Darren M., Murchie, Erik H. and Pridmore, Tony P. (2016) Approaches to three-dimensional reconstruction of plant shoot topology and geometry. Functional Plant Biology . ISSN 1445-4408

Pound, Michael P., Burgess, Alexandra J., Wilson, Michael H., Atkinson, Jonathan A., Griffiths, Marcus, Jackson, Aaron S., Bulat, Adrian, Tzimiropoulos, Yorgos, Wells, Darren M., Murchie, Erik H., Pridmore, Tony P. and French, Andrew P. (2016) Deep machine learning provides state-of-the art performance in image-based plant phenotyping. Cold Spring Harbor Laboratory.

Scharr, Hanno, Minervini, Massimo, French, Andrew P., Klukas, Christian, Kramer, David M., Liu, Xiaoming, Luengo, Imanol, Pape, Jean-Michel, Polder, Gerrit, Vukadinovic, Danijela, Yin, Xi and Tsaftaris, Sotirios A. (2016) Leaf segmentation in plant phenotyping: a collation study. Machine Vision and Applications, 27 (4). pp. 585-606. ISSN 1432-1769

Pound, Michael P., French, Andrew P., Fozard, John A., Murchie, Erik H. and Pridmore, Tony P. (2016) A patch-based approach to 3D plant shoot phenotyping. Machine Vision and Applications . ISSN 1432-1769

Luengo, Imanol, Basham, Mark and French, Andrew P. (2016) Fast global interactive volume segmentation with regional supervoxel descriptors. In: SPIE Medical Imaging 2016: Image Processing, 27 February 2016, San Diego, California.

2015

Gibbs, Jonathon, Pound, Michael P., Wells, Darren M., Murchie, Erik H., French, Andrew P. and Pridmore, Tony P. (2015) Three-dimensional reconstruction of plant shoots from multiple images using an active vision system. In: Agri-Food Robotics Workshop, 2 Oct 2015, Hamburg, Germany.

2014

Pound, Michael P., French, Andrew P., Murchie, Erik H. and Pridmore, Tony P. (2014) Automated recovery of 3D models of plant shoots from multiple colour images. Plant Physiology, 166 (4). pp. 1688-1698. ISSN 0032-0889

Dyson, Rosemary J., Vizcay-Barrena, Gema, Band, Leah R., Fernandes, Anwesha N., French, Andrew P., Fozard, John A., Hodgman, T. Charlie, Kenobi, Kim, Pridmore, Tony P., Stout, Michael, Wells, Darren M., Wilson, Michael H., Bennett, Malcolm J. and Jensen, Oliver E. (2014) Mechanical modelling quantifies the functional importance of outer tissue layers during root elongation and bending. New Phytologist, 202 (4). pp. 1212-1222. ISSN 1469-8137

Band, Leah R., Wells, Darren M., Fozard, John A., Ghetiu, Teodor, French, Andrew P., Pound, Michael P., Wilson, Michael H., Yu, Lei, Li, Wenda, Hijazi, Hussein I., Oh, Jaesung, Pearce, Simon P., Perez-Amador, Miguel A., Yun, Jeonga, Kramer, Eric, Alonso, Jose M., Godin, Christophe, Vernoux, Teva, Hodgman, T. C., Pridmore, Tony P., Swarup, Ranjan, King, John R. and Bennett, Malcolm J. (2014) Systems analysis of auxin transport in the Arabidopsis root apex. Plant Cell, 26 (3). pp. 862-875. ISSN 1040-4651

2013

Miguel-Pacheco, G.G., Kaler, Jasmeet, Remnant, J.G., Cheyne, Lydia, Abbott, Caroline, French, Andrew P., Pridmore, Tony P. and Huxley, Jonathan N. (2013) Behavioural changes in dairy cows with lameness in an automatic milking system. Applied Animal Behaviour Science, 150 . pp. 1-8. ISSN 0168-1591

Peret, Benjamin, Middleton, Alistair M., French, Andrew P., Larrieu, Antoine, Bishopp, Antony, Njo, Maria, Wells, Darren M., Porco, Silvana, Mellor, Nathan., Band, Leah R., Casimiro, Ilda, Kleine-Vehn, Jurgen, Vanneste, Steffen, Sairanen, Ilkka, Mallet, Romain, Sandberg, Goran, Ljung, Karin, Beeckman, Tom, Benkova, Eva, Friml, Jiri, Kramer, Eric, King, John R., De Smet, Ive, Pridmore, Tony, Owen, Markus R. and Bennett, Malcolm J. (2013) Sequential induction of auxin efflux and influx carriers regulates lateral root emergence. Molecular Systems Biology, 9 (1). 699/1-699/15. ISSN 1744-4292