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2018

Saad, Norazalina, Alberio, Ramiro, Johnson, Andrew D., Emes, Richard D., Giles, Tom C., Clarke, Philip, Grabowska, Anna M. and Allegrucci, Cinzia (2018) Cancer reversion with oocyte extracts is mediated by cell cycle arrest and induction of tumour dormancy. Oncotarget, 9 (22). pp. 16008-16027. ISSN 1949-2553

Blanchard, Adam M., Jolley, Keith A., Maiden, Martin C.J., Coffey, Tracey J., Maboni, Grazieli, Staley, Ceri E., Bollard, N.J., Warry, Andrew, Emes, Richard D., Davies, Peers and Tötemeyer, Sabine (2018) The applied development of a tiered multilocus sequence typing (MLST) scheme for Dichelobacter nodosus. Frontiers in Microbiology, 9 . 551/1-551/10. ISSN 1664-302X

Bewley, Martin A., Budd, Richard C., Ryan, Eilise, Cole, Joby, Collini, Paul, Marshall, Jennifer, Kolsum, Umme, Beech, Gussie, Emes, Richard D., Tcherniaeva, Irina, Berbers, Gguy A.M., Walmsley, Sarah R., Donaldson, Gavin, Wedzicha, Jadwiga A., Kilty, Iain, Rumsey, William, Sanchez, Yolanda, Brightling, Christopher E., Donnelly, Louise E., Barnes, Ppeter J., Singh, Dave, Whyte, Moira K.B. and Dockrell, David H. (2018) Opsonic phagocytosis in chronic obstructive pulmonary disease is enhanced by Nrf2 agonists. American Journal of Respiratory and Critical Care Medicine . ISSN 1073-449X

Sarker, N., Fabijan, J., Emes, Richard D., Hemmatzadeh, F., Meers, J., Moreton, Joanna, Owen, H., Seddon, J., Simmons, G., Speight, N., Trott, D., Woolford, L. and Tarlinton, Rachael E. (2018) Identification of stable reference genes for quantitative PCR in koalas. Scientific Reports, 8 . 3364/1-3364/8. ISSN 2045-2322

Al-Mayyahi, Rawaa S., Sterio, Luke D., Connolly, Joanne B., Adams, Christopher F., Al-Tumah, Wa'il A., Sen, Jon, Emes, Richard D., Hart, Sarah R. and Chari, Divya M. (2018) A proteomic investigation into mechanisms underpinning corticosteroid effects on neural stem cells. Molecular and Cellular Neuroscience, 86 . pp. 30-40. ISSN 1044-7431

Kitchen, Mark O., Bryan, Richard T., Emes, Richard D., Luscombe, Christopher J., Cheng, K.K., Zeegers, Maurice P., James, Nicholas D., Gommersall, Lyndon M. and Fryer, Anthony A. (2018) HumanMethylation450K array–identified biomarkers predict tumour recurrence/progression at initial diagnosis of high-risk non-muscle Invasive bladder cancer. Biomarkers in Cancer . ISSN 1179-299X

2017

Bhandare, Sudhakar G., Warry, Andrew, Emes, Richard D., Su, Jingliang, Barrow, Paul A. and Atterbury, Robert J. (2017) Complete genome sequences of seven Vibrio cholerae phages isolated in China. Genome Announcements, 5 (47). e01019-17/1-e01019-17/2. ISSN 2169-8287

Bhandare, Sudhakar Ganapati, Warry, Andrew, Emes, Richard D., Hooton, Steven P.T., Barrow, Paul A. and Atterbury, Robert J. (2017) Complete genome sequences of Vibrio cholera: specific bacteriophages 24 and X29. Genome Announcements, 5 (46). e01013/1-e01013/2. ISSN 2169-8287

Maboni, G., Blanchard, Adam M., Frosth, S., Stewart, Ceri E., Emes, Richard D. and Tötemeyer, Sabine (2017) A distinct bacterial dysbiosis associated skin inflammation in ovine footrot. Scientific Reports, 7 . 45220/1-45220/11. ISSN 2045-2322

Bayes, Alex, Collins, Mark O., Reig-Vader, Rrita, Gou, Gemma, Goulding, David, Izquierdo, Abril, Choudhary, Jyoti S., Emes, Richard D. and Grant, Seth G.N. (2017) Evolution of complexity in the zebrafish synapse proteome. Nature Communications . ISSN 2041-1723

Olcese, Chiara, Patel, Mitali P., Shoemark, Amelia, Kiviluoto, Santeri, Legendre, Marie, Williams, Hywel J., Vaughan, Cara K., Hayward, Jane, Goldenberg, Alice, Emes, Richard D., Munye, Mustafa M., Dyer, Laura, Cahill, Thomas, Bevillard, Jeremy, Gehrig, Corinne, Guipponi, Michel, Chantot, Sandra, Duquesnoy, Philippe, Thomas, Lucie, Jeanson, Ludovic, Copin, Bruno, Tamalet, Aline, Thauvin-Robinet, Christel, Papon, Jean- François, Garin, Antoine, Pin, Isabelle, Vera, Gabriella, Aurora, Paul, Fassad, Mahmoud R., Jenkins, Lucy, Boustred, Christopher, Cullup, Thomas, Dixon, Mellisa, Onoufriadis, Alexandros, Bush, Andrew, Chung, Eddie M. K., Antonarakis, Stylianos E., Loebinger, Michael R., Wilson, Robert, Armengot, Miguel, Escudier, Estelle, Hogg, Claire, Al-Turki, Saeed, Anderson, Carl, Antony, Dinu, Barroso, Inês, Beales, Philip L., Bentham, Jamie, Bhattacharya, Shoumo, Carss, Keren, Chatterjee, Krishna, Cirak, Sebahattin, Cosgrove, Catherine, Allan, Daly, Durbin, Richard, Fitzpatrick, David, Floyd, Jamie, Foley, A. Reghan, Franklin, Chris, Futema, Marta, Humphries, Steve E., Hurles, Matt, McCarthy, Shane, Muddyman, Dawn, Muntoni, Francesco, Parker, Victoria, Payne, Felicity, Plagnol, Vincent, Raymond, Lucy, Savage, David B., Scambler, Peter J., Schmidts, Miriam, Semple, Robert, Serra, Eva, Stalker, Jim, van Kogelenberg, Margriet, Vijayarangakannan, Parthiban, Walter, Klaudia, Amselem, Serge, Sun, Zhaoxia, Bartoloni, Lucia, Blouin, Jean-Louis and Mitchison, Hannah M. (2017) X-linked primary ciliary dyskinesia due to mutations in the cytoplasmic axonemal dynein assembly factor PIH1D3. Nature Communications, 8 . p. 14279. ISSN 2041-1723

2016

Daniel, Zoe, Swali, Angelina, Emes, Richard D. and Langley-Evans, Simon C. (2016) The effect of maternal undernutrition on the rat placental transcriptome: protein restriction up-regulates cholesterol transport. Genes and Nutrition, 11 (27). ISSN 1865-3499

Glossop, John R., Nixon, Nicola B., Emes, Richard D., Sim, Julius, Packman, Jon C., Mattey, Derek L., Farrell, William E. and Fryer, Anthony A. (2016) DNA methylation at diagnosis is associated with response to disease-modifying drugs in early rheumatoid arthritis. Epigenomics . ISSN 1750-192X

Sulaiman, Azad A., Zolnierczyk, Katarzyna, Japa, Ornampai, Owen, Jonathan P., Maddison, Ben C., Emes, Richard D., Hodgkinson, Jane E., Gough, Kevin C. and Flynn, Robin J. (2016) A trematode parasite derived growth factor binds and exerts influences on host immune functions via host cytokine receptor complexes. PloS Pathogens . 1005991/1-1005991/22. ISSN 1553-7374

Blanchard, Adam M., Egan, Sharon A., Emes, Richard D., Warry, Andrew and Leigh, James A. (2016) PIMMS (Pragmatic Insertional Mutation Mapping System) laboratory methodology a readily accessible tool for identification of essential genes in Streptococcus. Frontiers in Microbiology, 7 (1645). pp. 1-12. ISSN 1664-302X

Sulak, Michael, Fong, Lindsey, Mika, Katelyn, Chigurupati, Sravanthi, Yon, Lisa, Mongan, Nigel P., Emes, Richard D. and Lynch, Vincent J. (2016) TP53 copy number expansion is associated with the evolution of increased body size and an enhanced DNA damage response in elephants. eLife, 5 (e11994). ISSN 2050-084X

Naqid, Ibrahim A., Owen, Jonathan P., Maddison, Ben C., Spiliotopoulos, Anastasios, Emes, Richard D., Warry, Andrew, Flynn, Robin J., Martelli, Francesca, Gosling, Rebecca J., Davies, Robert H., La Ragione, Roberto M. and Gough, Kevin C. (2016) Mapping B-cell responses to Salmonella enterica serovars Typhimurium and Enteritidis in chickens for the discrimination of infected from vaccinated animals. Scientific Reports, 6 . 31186/1-31186/7. ISSN 2045-2322

Tarlinton, Rachael E., Alder, Lauren, Moreton, Joanna, Maboni, G., Emes, Richard D. and Tötemeyer, Sabine (2016) RNA expression of TLR10 in normal equine tissues. BMC Research Notes, 9 . 353/1-353/8. ISSN 1756-0500

Shephard, Freya, Greville-Heygate, Oliver, Liddell, Susan, Emes, Richard D. and Chakrabarti, Lisa (2016) Analysis of mitochondrial haemoglobin in Parkinson's disease brain. Mitochondrion, 29 . pp. 45-52. ISSN 1872-8278

Brown, David M., Williams, Hannah, Ryan, K.J.P., Wilson, T.L., Daniel, Zoe C.T.R., Mareko, M. H. D., Emes, Richard D., Harris, D. W., Wattis, Jonathan A.D., Dryden, Ian L., Hodgman, T. C., Brameld, John M. and Parr, Tim (2016) Mitochondrial phosphoenolpyruvate carboxykinase (PEPCK-M) and serine biosynthetic pathway genes are co-ordinately increased during anabolic agent-induced skeletal muscle growth. Scientific Reports, 6 . ISSN 2045-2322

Brown, D.M., Williams, H., Ryan, K.J.P., Wilson, T.L., Daniel, Zoe, Mareko, M.H.D., Emes, Richard D., Harris, D.W., Jones, Sarah, Wattis, Jonathan A.D., Dryden, Ian L., Hodgman, Charlie, Brameld, John M. and Parr, Tim (2016) Mitochondrial phosphoenolpyruvate carboxykinase (PEPCK-M) and serine biosynthetic pathway genes are co-ordinately increased during anabolic agent-induced skeletal muscle growth. Scientific Reports, 6 . p. 28693. ISSN 2045-2322

Naqid, Ibrahim A., Owen, Jonathan P., Maddison, Ben C., Spiliotopoulos, Anastasios, Emes, Richard D., Warry, Andrew, Tchorzewska, Monika, Martelli, Francesca, Gosling, Rebecca J., Davies, Robert H., La Ragione, Roberto M. and Gough, Kevin C. (2016) Mapping polyclonal antibody responses to bacterial infection using next generation phage display. Scientific Reports, 6 . 24232/1-24232/11. ISSN 2045-2322

Wu, Pensee, Farrell, William E., Haworth, Kim E., Emes, Richard D., Kitchen, Mark O., Glossop, John R., Hanna, Fahmy W and Fryer, Anthony A. (2016) Maternal genome-wide DNA methylation profiling in gestational diabetes shows distinctive disease-associated changes relative to matched healthy pregnancies. Epigenomics . ISSN 1750-192X

Kitchen, Mark O., Bryan, Richard T., Emes, Richard D., Glossop, John R., Luscombe, Christopher, Cheng, K.K., Zeegers, Maurice P., James, Nicholas D., Devall, Adam J., Mein, Charles A., Gommersall, Lyndon, Fryer, Anthony A. and Farrell, William E. (2016) Quantitative genome-wide methylation analysis of high-grade non-muscle invasive bladder cancer. Epigenetics, 11 (3). pp. 237-246. ISSN 1559-2308

Glossop, John R., Emes, Richard D., Nixon, Nicola B., Packham, Jon C., Fryer, Anthony A., Mattey, Derek L. and Farrell, William E. (2016) Genome-wide profiling in treatment-naive early rheumatoid arthritis reveals DNA methylome changes in T and B lymphocytes. Epigenomics, 8 (2). pp. 209-224. ISSN 1750-192X

Moreton, Joanna, Izquierdo, Abril and Emes, Richard D. (2016) Assembly, assessment and availability of de novo generated transcriptomes. Frontiers in Genetics, 6 . 361/1-361/9. ISSN 1664-8021

Davies, P.L., Archer, Simon C., Emes, Richard D., Bradley, Andrew J., Leigh, J.A. and Green, Martin J. (2016) Molecular epidemiology of Streptococcus uberis clinical mastitis in dairy herds: strain heterogeneity and transmission. Journal of Clinical Microbiology, 54 (1). pp. 68-74. ISSN 1098-660X

2015

Kitchen, Mark O., Yacub-Usman, Kiren, Emes, Richard D., Richardson, Alan, Clayton, Richard N. and Farrell, William E. (2015) Epidrug mediated re-expression of miRNA targeting the HMGA transcripts in pituitary cells. Pituitary, 18 (5). pp. 674-684. ISSN 1573-7403

Kitchen, Mark O., Bryan, Richard T., Haworth, Kim E., Emes, Richard D., Luscombe, Christopher, Gommersall, Lyndon, Cheng, K.K., Zeegers, Maurice P., James, Nicholas D., Devall, Adam J., Fryer, Anthony A. and Farrell, William E. (2015) Methylation of HOXA9 and ISL1 predicts patient outcome in high-grade non-invasive bladder cancer. PlosOne, 10 (9). e0137003/1-e0137003/12. ISSN 1932-6203

Glossop, John R., Haworth, Kim E., Emes, Richard D., Nixon, Nicola B., Packham, Jon C., Dawes, Peter T., Fryer, Anthony A., Mattey, Derek L. and Farrell, William E. (2015) DNA methylation profiling of synovial fluid FLS in rheumatoid arthritis reveals changes common with tissue-derived FLS. Epigenomics, 7 (4). pp. 539-551. ISSN 1750-1911

Hossain, Maqsud, Egan, Sharon A., Coffey, Tracey, Ward, Philip N., Wilson, Ray, Leigh, James A. and Emes, Richard D. (2015) Virulence related sequences: insights provided by comparative genomics of Streptococcus uberis of differing virulence. BMC Genomics, 16 . e334/1-e334/13. ISSN 1471-2164

Winter, Alan D., Gillan, Victoria, Maitland, Kirsty, Emes, Richard D., Roberts, BBrett, McCormack, Gillian, Weir, William, Prostaio, Anna V., Holroyd, Nancy, Berriman, Matthew, Britton, Collette and Devaney, Eileen (2015) A novel member of the let-7 microRNA family is associated with developmental transitions in filarial nematode parasites. BMC Genomics, 16 . e331/1-e331/15. ISSN 1471-2164

Blanchard, Adam M., Leigh, James A., Egan, Sharon A. and Emes, Richard D. (2015) Transposon insertion mapping with PIMMS, Pragmatic Insertional Mutation Mapping System. Frontiers in Genetics, 6 . e139/1-e139/8. ISSN 1664-8021

Simpson, Siobhan, Edwards, Jennifer, Emes, Richard D., Cobb, Malcolm A., Mongan, Nigel P. and Rutland, Catrin S. (2015) A predictive model for canine dilated cardiomyopathy: a meta-analysis of Doberman Pinscher data. PeerJ, 3 . e842/1-e842/16. ISSN 2167-8359

Simpson, Siobhan, Edwards, Jennifer, Emes, Richard D., Cobb, Malcolm A., Mongan, Nigel P. and Rutland, Catrin S. (2015) A predictive model for canine dilated cardiomyopathy: a meta-analysis of Doberman Pinscher data. PeerJ (e842). e842/1-e842/16. ISSN 2167-8359

Simpson, Siobhan, Edwards, Jennifer, Emes, Richard D., Cobb, Malcolm A., Mongan, Nigel P. and Rutland, Catrin S. (2015) A predictive model for canine dilated cardiomyopathy: a meta-analysis of Doberman Pinscher data. PeerJ, 3 . e842/1-e842/16. ISSN 2167-8359

Japa, Ornampai, Hodgkinson, Jane E., Emes, Richard D. and Flynn, Robin J. (2015) TGF-β superfamily members from the helminth Fasciola hepatica show intrinsic effects on viability and development. Veterinary Research, 46 (29). ISSN 1297-9716

Russell, Karen, Emes, Richard D. and Horrocks, Paul (2015) Triaging informative cis-regulatory elements for the combinatorial control of temporal gene expression during Plasmodium falciparum intraerythrocytic development. Parasites and Vectors, 8 (81). ISSN 1756-3305

2014

Brown, Katherine, Emes, Richard D. and Tarlinton, Rachael E. (2014) Multiple groups of endogenous epsilon-like retroviruses conserved across primates. Journal of Virology, 88 (21). pp. 12464-12471. ISSN 0022-538X

Moreton, Joanna, Dunham, Stephen P. and Emes, Richard D. (2014) A consensus approach to vertebrate de novo transcriptome assembly from RNA-seq data: assembly of the duck (Anas platyrhynchos) transcriptome. Frontiers in Genetics, 5 . p. 190. ISSN 1664-8021

Moreton, Joanna, Malla, Sunir, Aboobaker, Aziz, Tarlinton, Rachael E. and Emes, Richard D. (2014) Characterisation of the horse transcriptome from immunologically active tissues. PeerJ . ISSN 2167-8359

Nilsson, Emeli M., Fainberg, Hernan P., Choong, Siew S., Giles, Thomas C., Sells, James, May, Sean, Stansfield, Fiona J., Allen, William R., Emes, Richard D., Mostyn, Alison, Mongan, Nigel P. and Yon, Lisa (2014) Molecular characterization of adipose tissue in the African elephant (Loxodonta africana). PLoS ONE, 9 (3). e91717/1-e91717/11. ISSN 1932-6203

Onoufriadis, Alexandros, Shoemark, Amelia, Schmidts, Miriam, Patel, Mitali, Jimenez, Gina, Liu, Hui, Thomas, Biju, Dixon, Melissa, Hirst, Robert A., Rutman, Andrew, Burgoyne, Thomas, Williams, Christopher, Scully, Juliet, Bolard, Florence, Lafitte, Jean-Jacques, Beales, Philip L., Hogg, Claire, Yang, Pinfen, Chung, Eddie M.K., Emes, Richard D., O'Callaghan, Christopher, Bouvagnet, Patrice and Mitchison, Hannah M. (2014) Targeted NGS gene panel identifies mutations in RSPH1 causing primary ciliary dyskinesia and a common mechanism for ciliary central pair agenesis due to radial spoke defects. Human Molecular Genetics, 23 (13). pp. 3362-3374. ISSN 1460-2083

2013

Tarlinton, Rachael E., Barfoot, Hannah K.R., Allen, Ceri E., Brown, Katherine, Gifford, Robert J. and Emes, Richard D. (2013) Characterisation of a group of endogenous gammaretroviruses in the canine genome. Veterinary Journal, 196 (1). pp. 28-33. ISSN 1090-0233

Glossop, John R., Nixon, Nicola B., Emes, Richard D., Haworth, Kim E., Packham, Jon C., Dawes, Peter T., Fryer, Anthony A., Mattey, Derek L. and Farrell, William E. (2013) Epigenome-wide profiling identifies significant differences in DNA methylation between matched-pairs of T- and B-lymphocytes from healthy individuals. Epigenetics, 8 (11). pp. 1188-1197. ISSN 1559-2294

2012

Brown, Katherine, Moreton, Joanna, Malla, Sunir, Aboobaker, A. Aziz, Emes, Richard D. and Tarlinton, Rachael E. (2012) Characterisation of retroviruses in the horse genome and their transcriptional activity via transcriptome sequencing. Virology, 433 (1). pp. 55-63. ISSN 0042-6822

2011

Rutland, Catrin S., Polo-Parada, Luis, Ehler, Elisabeth, Alibhai, Aziza, Thorpe, Aaran, Suren, Suganthi, Emes, Richard D., Patel, Bhakti and Loughna, Siobhan (2011) Knockdown of embryonic myosin heavy chain reveals an essential role in the morphology and function of the developing heart. Development, 138 (18). pp. 3955-3966. ISSN 1477-9129