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Daly, Paul, van Munster, Jolanda M., Kokolski, Matthew, Sang, Fei, Blythe, Martin J., Malla, Sunir, Velasco de Castro Oliveira, Juliana, Goldman, Gustavo H. and Archer, David B. (2017) Transcriptomic responses of mixed cultures of ascomycete fungi to lignocellulose using dual RNA-seq reveal inter-species antagonism and limited beneficial effects on CAZyme expression. Fungal Genetics and Biology, 102 . pp. 4-21. ISSN 1096-0937

Daly, Paul, van Munster, Jolanda M., Blythe, Martin J., Ibbett, Roger, Kokolski, Matthew, Gaddipati, Sanyasi, Lindquist, Erika, Singan, Vasanth R., Barry, Kerrie W., Lipzen, Anna, Ngan, Chew Yee, Petzold, Christopher J., Chan, Leanne Jade G., Pullan, Steven T., Delmas, Stéphane, Waldron, Paul R., Grigoriev, Igor V., Tucker, Gregory A., Simmons, Blake A. and Archer, David B. (2017) Expression of Aspergillus niger CAZymes is determined by compositional changes in wheat straw generated by hydrothermal or ionic liquid pretreatments. Biotechnology for Biofuels, 10 (1). 35/1-35/19. ISSN 1754-6834

Novodvorska, Michaela, Stratford, Malcolm, Blythe, Martin J., Wilson, Raymond, Beniston, Richard G. and Archer, David B. (2016) Metabolic activity in dormant conidia ofAspergillus nigerand developmental changes during conidial outgrowth. Fungal Genetics and Biology . ISSN 1087-1845

Bonthala, Venkata Suresh, Mayes, Sean, Moreton, Joanna, Blythe, Martin J., Wright, Victoria, May, Sean, Massawe, Festo, Mayes, Sean and Twycross, Jamie (2016) Identification of gene modules associated with low temperatures response in Bambara groundnut by network-based analysis. PLoS ONE, 11 (2). e0148771. ISSN 1932-6203

Müller, Carolin A., Hawkins, Michelle, Retkute, Renata, Malla, Sunir, Wilson, Ray, Blythe, Martin J., Nakato, Ryuichiro, Komata, Makiko, Shirahige, Katsuhiko, de Moura, Alessandro P.S. and Nieduszynski, Conrad A. (2014) The dynamics of genome replication using deep sequencing. Nucleic Acids Research, 42 (1). e3/1-e3/11. ISSN 0305-1048

Derecka, Kamila, Blythe, Martin J., Malla, Sunir, Genereux, Diane P., Guffanti, Alessandro, Pavan, Paolo, Moles, Anna, Snart, Charles, Ryder, Thomas, Ortori, Catharine A., Barrett, David A., Schuster, Eugene and Stöger, Reinhard (2013) Transient exposure to low levels of insecticide affects metabolic networks of honeybee larvae. PLoS ONE, 8 (7). e68191/1-e68191/11. ISSN 1932-6203

Novodvorska, Michaela, Hayer, Kimran, Pullan, Steven T., Wilson, Raymond, Blythe, Martin J., Stam, Hein, Stratford, Malcolm and Archer, David B. (2013) Transcriptional landscape of Aspergillus niger at breaking of conidial dormancy revealed by RNA-sequencing. BMC Genomics, 14 (246). ISSN 1471-2164

Delmas, Stéphane, Pullan, Steven T., Gaddipati, Sanyasi, Kokolski, Matthew, Malla, Sunir, Blythe, Martin J., Ibbett, Roger, Campbell, Maria, Liddell, Susan, Aboobaker, Aziz, Tucker, Gregory A. and Archer, David B. (2012) Uncovering the genome-wide transcriptional responses of the filamentous fungus Aspergillus niger to lignocellulose using RNA sequencing. PLoS Genetics, 8 (8). e1002875/1-e1002875/13. ISSN 1553-7390

Blythe, Martin J., Malla, Sunir, Everall, Richard, Shih, Yu-huan, Lemay, Virginie, Moreton, Joanna, Wilson, Raymond and Aboobaker, Aziz (2012) High through-put sequencing of the Parhyale hawaiensis mRNAs and microRNAs to aid comparative developmental studies. PLoS ONE, 7 (3). e33784/1-e33784/12. ISSN 1932-6203