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Atkinson, Jonathan A., Pound, Michael P., Bennett, Malcolm J. and Wells, Darren M. (2019) Uncovering the hidden half of plants using new advances in root phenotyping. Current Opinion in Biotechnology, 55 . pp. 1-8. ISSN 1879-0429

Kenobi, Kim, Atkinson, Jonathan A., Wells, Darren M., Gaju, Oorbessy, deSilva, Jayalath G., Foulkes, M. John, Dryden, Ian L., Wood, Andrew T.A. and Bennett, Malcolm J. (2017) Linear discriminant analysis reveals differences in root architecture in wheat seedlings by nitrogen uptake efficiency. Journal of Experimental Botany, 68 (17). pp. 4969-4981. ISSN 1460-2431

Atkinson, Jonathan A. and Wells, Darren M. (2017) An updated protocol for high throughput plant tissue sectioning. Frontiers in Plant Science, 8 . p. 1721. ISSN 1664-462X

Pound, Michael P., Atkinson, Jonathan A., Townsend, Alexandra J., Wilson, Michael H., Griffiths, Marcus, Jackson, Aaron S., Bulat, Adrian, Tzimiropoulos, Georgios, Wells, Darren M., Murchie, Erik H., Pridmore, Tony P. and French, Andrew P. (2017) Deep machine learning provides state-of-the-art performance in image-based plant phenotyping. GigaScience, 6 (10). pp. 1-10. ISSN 2047-217X

Atkinson, Jonathan A., Lobet, Guillaume, Noll, Manuel, Meyer, Patrick E., Griffiths, Marcus and Wells, Darren M. (2017) Combining semi-automated image analysis techniques with machine learning algorithms to accelerate large-scale genetic studies. GigaScience, 6 (10). pp. 1-7. ISSN 2047-217X

Passot, Sixtine, Gnacko, Fatoumata, Moukouanga, Daniel, Lucas, Mikaël, Guyomarc’h, Soazig, Ortega, Beatriz Moreno, Atkinson, Jonathan A., Belko, Marème N., Bennett, Malcolm J., Gantet, Pascal, Wells, Darren M., Guédon, Yann, Vigouroux, Yves, Verdeil, Jean-Luc, Muller, Bertrand and Laplaze, Laurent (2016) Characterization of pearl millet root architecture and anatomy reveals three types of lateral roots. Frontiers in Plant Science, 7 . p. 829. ISSN 1664-462X

Atkinson, Jonathan A., Wingen, Luzie U., Griffiths, Marcus, Pound, Michael P., Gaju, Oorbessy, Foulkes, John, Le Gouis, Jacques, Griffiths, Simon, Bennett, Malcolm J., King, Julie and Wells, Darren M. (2015) Phenotyping pipeline reveals major seedling root growth QTL in hexaploid wheat. Journal of Experimental Botany, 66 (8). pp. 2283-2292. ISSN 1460-2431

Atkinson, Jonathan A., Rasmussen, Amanda, Traini, Richard, Voss, Ute, Sturrock, Craig, Mooney, Sacha J., Wells, Darren M. and Bennett, Malcolm J. (2014) Branching out in roots: uncovering form, function, and regulation. Plant Physiology, 166 (2). pp. 538-550. ISSN 0032-0889

Conference or Workshop Item

Pound, Michael P., Atkinson, Jonathan A., Wells, Darren M., Pridmore, Tony P. and French, Andrew P. (2017) Deep learning for multi-task plant phenotyping. In: ICCV 2017 International Conference on Computer Vision, 22-29 October, 2017, Venice, Italy.

Book Section

Atkinson, Jonathan A., Jackson, Robert J., Bentley, Alison R., Ober, Eric and Wells, Darren M. (2018) Field phenotyping for the future. In: Annual Plant Reviews Online. Annual Plant Reviews Online (51). Wiley. ISBN 9781119312994 (In Press)

Thesis (University of Nottingham only)

Atkinson, Jonathan A. (2016) Phenotyping root architecture in diverse wheat germplasm. PhD thesis, University of Nottingham.

Other

Atkinson, Jonathan A., Lobet, Guillaume, Noll, Manuel, Meyer, Patrick E., Griffiths, Marcus and Wells, Darren M. (2017) Combining semi-automated image analysis techniques with machine learning algorithms to accelerate large scale genetic studies. bioRxiv, Cold Spring Harbor, N.Y., USA.

Pound, Michael P., Burgess, Alexandra J., Wilson, Michael H., Atkinson, Jonathan A., Griffiths, Marcus, Jackson, Aaron S., Bulat, Adrian, Tzimiropoulos, Yorgos, Wells, Darren M., Murchie, Erik H., Pridmore, Tony P. and French, Andrew P. (2016) Deep machine learning provides state-of-the art performance in image-based plant phenotyping. Cold Spring Harbor Laboratory.