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Daly, Paul, van Munster, Jolanda M., Kokolski, Matthew, Sang, Fei, Blythe, Martin J., Malla, Sunir, Velasco de Castro Oliveira, Juliana, Goldman, Gustavo H. and Archer, David B. (2017) Transcriptomic responses of mixed cultures of ascomycete fungi to lignocellulose using dual RNA-seq reveal inter-species antagonism and limited beneficial effects on CAZyme expression. Fungal Genetics and Biology, 102 . pp. 4-21. ISSN 1096-0937

van Munster, Jolanda M., Thomas, Baptiste, Riese, Michel, Davis, Andrienne L., Gray, Christopher J., Archer, David B. and Flitsch, Sabine L. (2017) Application of carbohydrate arrays coupled with mass spectrometry to detect activity of plant-polysaccharide degradative enzymes from the fungus Aspergillus niger. Scientific Reports, 7 (43117). pp. 1-13. ISSN 2045-2322

Daly, Paul, van Munster, Jolanda M., Blythe, Martin J., Ibbett, Roger, Kokolski, Matthew, Gaddipati, Sanyasi, Lindquist, Erika, Singan, Vasanth R., Barry, Kerrie W., Lipzen, Anna, Ngan, Chew Yee, Petzold, Christopher J., Chan, Leanne Jade G., Pullan, Steven T., Delmas, Stéphane, Waldron, Paul R., Grigoriev, Igor V., Tucker, Gregory A., Simmons, Blake A. and Archer, David B. (2017) Expression of Aspergillus niger CAZymes is determined by compositional changes in wheat straw generated by hydrothermal or ionic liquid pretreatments. Biotechnology for Biofuels, 10 (1). 35/1-35/19. ISSN 1754-6834

Vries, Ronald P. de, Riley, Robert, Wiebenga, Ad, Aguilar-Osorio, Guillermo, Amillis, Sotiris, Akemi Uchima, Cristiane, Anderluh, Gregor, Asaollahi, Mojtaba, Askin, Marion, Barry, Kerrie, Battaglia, Evy, Bayram, Ozgur, Benocci, Tiziano, Braus-Stromeyer, Susanna A., Caldana, Camila, Cánovas, David, Cerqueira, Gustavo C., Chen, Fusheng, Chen, Wanping, Choi, Cindy, Clum, Alicia, Corrêa dos Santos, Renato Augusto, Lima Damásio, André Ricardo de, Diallinas, George, Emri, Tamás, Fekete, Erzébet, Flipphi, Michel, Freyburg, Susanne, Gallo, Antonia, Gournas, Christos, Habgood, Rob, Hainaut, Matthieu, Harispe, Maria Laura, Henrissat, Bernard, Hildén, Kristiina S., Hope, Ryan, Hossain, Abeer, Karabika, Eugenia, Karaffa, Levente, Karanyi, Zsolt, Krasevec, Nada, Kuo, Alan, Kusch, Harald, LaButti, Kurt, Lagendijk, Ellen L., Lapidus, Alla, Levasseur, Anthony, Lindquist, Erika, Lipzen, Anna, Logrieco, Antonio F., MacCabe, Andrew, Mäkela, Miia R., Malavazi, Iran, Melin, Petter, Meyer, Vera, Mielnichuk, Natalia, Miskei, Márton, Molnár, Ákos P., Mulé, Giuseppina, Ngan, Chew Yee, Orejas, Margarita, Orosz, Erzsébet, Ouedraogo, Jean Paul, Overkamp, Karin M., Park, Hee-Soo, Perrone, Giancarlo, Piumi, Francois, Punt, Peter J., Ram, Arthur F.J., Ramon, Ana, Rauscher, Stefan, Record, Eric, Riaño-Pachón, Diego Mauricio, Robert, Vincent, Röhrig, Julian, Ruller, Roberto, Salamov, Asaf, Salih, Nadhira S., Samson, Rob A., Sándor, Erzsébet, Sanguinetti, Manuel, Schütze, Tabea, Sepčić, Kristina, Shelest, Ekaterina, Sherlock, Gavin, Sophianopoulou, Vicky, Squina, Fabio M., Sun, Hui, Susca, Antonia, Todd, Richard B., Tsang, Adrian, Unkles, Shiela E., Wiele, Nathalie van de, Rossen-Uffink, Diana van, Velasco de Castro Oliveira, Juliana, Vesth, Tammi C., Visser, Jaap, Yu, Jae-Hyuk, Zhou, Miaomiao, Andersen, Mikael R., Archer, David B., Baker, Scott E., Benoit, Isabelle, Brakhage, Axel A., Braus, Gerhard H., Fischer, Reinhard, Frisvad, Jens C., Goldman, Gustavo H., Houbraken, Jos, Oakley, Berl, Pócsi, István, Scazzocchio, Claudio, Seiboth, Bernhard, vanKuyk, Patricia A., Wortman, Jennifer, Dyer, Paul S. and Grigoriev, Igor V. (2017) Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus. Genome Biology . ISSN 1474-760X (Unpublished)

Novodvorska, Michaela, Stratford, Malcolm, Blythe, Martin J., Wilson, Raymond, Beniston, Richard G. and Archer, David B. (2016) Metabolic activity in dormant conidia ofAspergillus nigerand developmental changes during conidial outgrowth. Fungal Genetics and Biology . ISSN 1087-1845

Raulo, Roxane, Archer, David B. and Kokolski, Matthew (2016) The roles of the zinc finger transcription factors XlnR, ClrA and ClrB in the breakdown of lignocellulose by Aspergillus niger. AMB Express, 6 (5). pp. 1-12. ISSN 2191-0855

Archer, David B. (2014) RNA-sequencing reveals the complexities of the transcriptional response to lignocellulosic biofuel substrates in Aspergillus niger. Fungal Biology and Biotechnology, 1 (3). ISSN 2054-3085

Novodvorska, Michaela, Hayer, Kimran, Pullan, Steven T., Wilson, Raymond, Blythe, Martin J., Stam, Hein, Stratford, Malcolm and Archer, David B. (2013) Transcriptional landscape of Aspergillus niger at breaking of conidial dormancy revealed by RNA-sequencing. BMC Genomics, 14 (246). ISSN 1471-2164

Delmas, Stéphane, Pullan, Steven T., Gaddipati, Sanyasi, Kokolski, Matthew, Malla, Sunir, Blythe, Martin J., Ibbett, Roger, Campbell, Maria, Liddell, Susan, Aboobaker, Aziz, Tucker, Gregory A. and Archer, David B. (2012) Uncovering the genome-wide transcriptional responses of the filamentous fungus Aspergillus niger to lignocellulose using RNA sequencing. PLoS Genetics, 8 (8). e1002875/1-e1002875/13. ISSN 1553-7390

Whyteside, Graham, Alcocer, Marcos J.C., Kumita, Janet R., Dobson, Christopher M., Lazarou, Maria, Pleass, Richard J. and Archer, David B. (2011) Native-state stability determines the extent of degradation relative to secretion of protein variants from Pichia pastoris. PLoS ONE, 6 (7). e22692/1-e22692/10. ISSN 1932-6203

Book Section

Daly, Paul, van Munster, Jolanda M., Archer, David B. and Raulo, Roxane (2015) Transcriptional regulation and responses in filamentous fungi exposed to lignocellulose. In: Mycology: current and future developments: fungal biotechnology for biofuel production. Bentham Science, pp. 82-127. ISBN 9781681080741