Browse by Authors and Editors

Up a level
Export as [feed] RSS 1.0 [feed] RSS 2.0
Group by: Item Type | Date | No Grouping
Number of items: 26.

Article

Atkinson, Jonathan A. and Pound, Michael P. and Bennett, Malcolm J. and Wells, Darren M. (2019) Uncovering the hidden half of plants using new advances in root phenotyping. Current Opinion in Biotechnology, 55 . pp. 1-8. ISSN 1879-0429

Pridmore, Tony P. and Gibbs, Jonathon and Pound, Michael P. and French, Andrew P. and Wells, Darren M. and Murchie, Erik H. (2018) Plant phenotyping: an active vision cell for three-dimensional plant shoot reconstruction. Plant Physiology . ISSN 1532-2548 (In Press)

Muller, Lukas and Bennett, Malcolm J. and French, Andy and Wells, Darren M. and Swarup, Ranjan (2018) Root gravitropism: quantification, challenges, and solutions. Methods in Molecular Biology, 1761 . pp. 103-112. ISSN 1940-6029

von Wangenheim, Daniel and Wells, Darren M. and Bennett, Malcolm J. (2017) Adding a piece to the leaf epidermal cell shape puzzle. Developmental Cell, 43 (3). pp. 255-256. ISSN 1878-1551

Kenobi, Kim and Atkinson, Jonathan A. and Wells, Darren M. and Gaju, Oorbessy and deSilva, Jayalath G. and Foulkes, M. John and Dryden, Ian L. and Wood, Andrew T.A. and Bennett, Malcolm J. (2017) Linear discriminant analysis reveals differences in root architecture in wheat seedlings by nitrogen uptake efficiency. Journal of Experimental Botany, 68 (17). pp. 4969-4981. ISSN 1460-2431

Atkinson, Jonathan A. and Wells, Darren M. (2017) An updated protocol for high throughput plant tissue sectioning. Frontiers in Plant Science, 8 . p. 1721. ISSN 1664-462X

Pound, Michael P. and Atkinson, Jonathan A. and Townsend, Alexandra J. and Wilson, Michael H. and Griffiths, Marcus and Jackson, Aaron S. and Bulat, Adrian and Tzimiropoulos, Georgios and Wells, Darren M. and Murchie, Erik H. and Pridmore, Tony P. and French, Andrew P. (2017) Deep machine learning provides state-of-the-art performance in image-based plant phenotyping. GigaScience, 6 (10). pp. 1-10. ISSN 2047-217X

Morris, Emily C. and Griffiths, Marcus and Golebiowska, Agata and Mairhofer, Stefan and Burr-Hersey, Jasmine and Goh, Tatsuaki and von Wangenheim, Daniel and Atkinson, Brian and Sturrock, Craig J. and Lynch, Jonathan P. and Vissenberg, Kris and Ritz, Karl and Wells, Darren M. and Mooney, Sacha J. and Bennett, Malcolm J. (2017) Shaping 3D root system architecture. Current Biology, 27 (17). R919-R930. ISSN 1879-0445

Atkinson, Jonathan A. and Lobet, Guillaume and Noll, Manuel and Meyer, Patrick E. and Griffiths, Marcus and Wells, Darren M. (2017) Combining semi-automated image analysis techniques with machine learning algorithms to accelerate large-scale genetic studies. GigaScience, 6 (10). pp. 1-7. ISSN 2047-217X

Dietrich, Daniela and Pang, Lei and Kobayashi, Akie and Fozard, John A. and Boudolf, Véronique and Bhosale, Rahul and Antoni, Regina and Nguyen, Tuan and Hiratsuka, Sotaro and Fujii, Nobuharu and Miyazawa, Yutaka and Bae, Tae-Woong and Wells, Darren M. and Owen, Markus R. and Band, Leah R. and Dyson, Rosemary J. and Jensen, Oliver E. and King, John R. and Tracy, Saoirse R. and Sturrock, Craig and Mooney, Sacha J. and Roberts, Jeremy A. and Bhalerao, Rishikesh P. and Dinneny, José R. and Rodriguez, Pedro L. and Nagatani, Akira and Hosokawa, Yoichiroh and Baskin, Tobias I. and Pridmore, Tony P. and De Veylder, Lieven and Takahashi, Hideyuki and Bennett, Malcolm J. (2017) Root hydrotropism is controlled via a cortex-specific growth mechanism. Nature Plants, 3 . p. 17057. ISSN 2055-0278

Goh, Tatsuaki and Toyokura, Koichi and Wells, Darren M. and Swarup, Kamal and Yamamoto, Mayuko and Mimura, Tetsuro and Weijers, Dolf and Fukaki, Hidehiro and Laplaze, Laurent and Bennett, Malcolm J. and Guyomarc'h, Soazig (2016) Quiescent center initiation in the Arabidopsislateral root primordia is dependent on the SCARECROW transcription factor. Development, 143 (18). pp. 3363-3371. ISSN 1477-9129

Gibbs, Jonathon and Pound, Michael P. and French, Andrew P. and Wells, Darren M. and Murchie, Erik H. and Pridmore, Tony P. (2016) Approaches to three-dimensional reconstruction of plant shoot topology and geometry. Functional Plant Biology . ISSN 1445-4408

Passot, Sixtine and Gnacko, Fatoumata and Moukouanga, Daniel and Lucas, Mikaël and Guyomarc’h, Soazig and Ortega, Beatriz Moreno and Atkinson, Jonathan A. and Belko, Marème N. and Bennett, Malcolm J. and Gantet, Pascal and Wells, Darren M. and Guédon, Yann and Vigouroux, Yves and Verdeil, Jean-Luc and Muller, Bertrand and Laplaze, Laurent (2016) Characterization of pearl millet root architecture and anatomy reveals three types of lateral roots. Frontiers in Plant Science, 7 . p. 829. ISSN 1664-462X

Voß, Ute and Wilson, Michael H. and Kenobi, Kim and Gould, Peter D. and Robertson, Fiona C. and Peer, Wendy A. and Lucas, Mikaël and Swarup, Kamal and Casimiro, Ilda and Holman, Tara J. and Wells, Darren M. and Péret, Benjamin and Goh, Tatsuaki and Fukaki, Hidehiro and Hodgman, T. Charlie and Laplaze, Laurent and Halliday, Karen J. and Ljung, Karin and Murphy, Angus S. and Hall, Anthony J. and Webb, Alex A. R. and Bennett, Malcolm J. (2015) The circadian clock rephases during lateral root organ initiation in Arabidopsis thaliana. Nature Communications, 6 . 7641/1-7641/9. ISSN 2041-1723

Atkinson, Jonathan A. and Wingen, Luzie U. and Griffiths, Marcus and Pound, Michael P. and Gaju, Oorbessy and Foulkes, John and Le Gouis, Jacques and Griffiths, Simon and Bennett, Malcolm J. and King, Julie and Wells, Darren M. (2015) Phenotyping pipeline reveals major seedling root growth QTL in hexaploid wheat. Journal of Experimental Botany, 66 (8). pp. 2283-2292. ISSN 1460-2431

Wilson, Michael H. and Holman, Tara J. and Sørensen, Iben and Cancho-Sanchez, Ester and Wells, Darren M. and Swarup, Ranjan and Knox, J. Paul and Willats, William G.T. and Ubeda-Tomás, Susana and Holdsworth, Michael J. and Bennett, Malcolm J. and Vissenberg, Kris and Hodgman, T. Charlie (2015) Multi-omics analysis identifies genes mediating the extension of cell walls in the Arabidopsis thaliana root elongation zone. Frontiers in Cell and Developmental Biology, 3 . 10/1-10/12. ISSN 2296-634X

Mairhofer, Stefan and Sturrock, Craig and Wells, Darren M. and Bennett, Malcolm J. and Mooney, Sacha J. and Pridmore, Tony (2014) On the evaluation of methods for the recovery of plant root systems from X-ray computed tomography images. Functional Plant Biology, 42 (5). pp. 460-470. ISSN 1445-4408

Atkinson, Jonathan A. and Rasmussen, Amanda and Traini, Richard and Voss, Ute and Sturrock, Craig and Mooney, Sacha J. and Wells, Darren M. and Bennett, Malcolm J. (2014) Branching out in roots: uncovering form, function, and regulation. Plant Physiology, 166 (2). pp. 538-550. ISSN 0032-0889

Dyson, Rosemary J. and Vizcay-Barrena, Gema and Band, Leah R. and Fernandes, Anwesha N. and French, Andrew P. and Fozard, John A. and Hodgman, T. Charlie and Kenobi, Kim and Pridmore, Tony P. and Stout, Michael and Wells, Darren M. and Wilson, Michael H. and Bennett, Malcolm J. and Jensen, Oliver E. (2014) Mechanical modelling quantifies the functional importance of outer tissue layers during root elongation and bending. New Phytologist, 202 (4). pp. 1212-1222. ISSN 1469-8137

Band, Leah R. and Wells, Darren M. and Fozard, John A. and Ghetiu, Teodor and French, Andrew P. and Pound, Michael P. and Wilson, Michael H. and Yu, Lei and Li, Wenda and Hijazi, Hussein I. and Oh, Jaesung and Pearce, Simon P. and Perez-Amador, Miguel A. and Yun, Jeonga and Kramer, Eric and Alonso, Jose M. and Godin, Christophe and Vernoux, Teva and Hodgman, T. C. and Pridmore, Tony P. and Swarup, Ranjan and King, John R. and Bennett, Malcolm J. (2014) Systems analysis of auxin transport in the Arabidopsis root apex. Plant Cell, 26 (3). pp. 862-875. ISSN 1040-4651

Peret, Benjamin and Middleton, Alistair M. and French, Andrew P. and Larrieu, Antoine and Bishopp, Antony and Njo, Maria and Wells, Darren M. and Porco, Silvana and Mellor, Nathan. and Band, Leah R. and Casimiro, Ilda and Kleine-Vehn, Jurgen and Vanneste, Steffen and Sairanen, Ilkka and Mallet, Romain and Sandberg, Goran and Ljung, Karin and Beeckman, Tom and Benkova, Eva and Friml, Jiri and Kramer, Eric and King, John R. and De Smet, Ive and Pridmore, Tony and Owen, Markus R. and Bennett, Malcolm J. (2013) Sequential induction of auxin efflux and influx carriers regulates lateral root emergence. Molecular Systems Biology, 9 (1). 699/1-699/15. ISSN 1744-4292

Conference or Workshop Item

Pound, Michael P. and Atkinson, Jonathan A. and Wells, Darren M. and Pridmore, Tony P. and French, Andrew P. (2017) Deep learning for multi-task plant phenotyping. In: ICCV 2017 International Conference on Computer Vision, 22-29 October, 2017, Venice, Italy.

Gibbs, Jonathon and Pound, Michael P. and Wells, Darren M. and Murchie, Erik H. and French, Andrew P. and Pridmore, Tony P. (2015) Three-dimensional reconstruction of plant shoots from multiple images using an active vision system. In: Agri-Food Robotics Workshop, 2 Oct 2015, Hamburg, Germany.

Book Section

Atkinson, Jonathan A. and Jackson, Robert J. and Bentley, Alison R. and Ober, Eric and Wells, Darren M. (2018) Field phenotyping for the future. In: Annual Plant Reviews Online. Annual Plant Reviews Online (51). Wiley. ISBN 9781119312994 (In Press)

Other

Atkinson, Jonathan A. and Lobet, Guillaume and Noll, Manuel and Meyer, Patrick E. and Griffiths, Marcus and Wells, Darren M. (2017) Combining semi-automated image analysis techniques with machine learning algorithms to accelerate large scale genetic studies. bioRxiv, Cold Spring Harbor, N.Y., USA.

Pound, Michael P. and Burgess, Alexandra J. and Wilson, Michael H. and Atkinson, Jonathan A. and Griffiths, Marcus and Jackson, Aaron S. and Bulat, Adrian and Tzimiropoulos, Yorgos and Wells, Darren M. and Murchie, Erik H. and Pridmore, Tony P. and French, Andrew P. (2016) Deep machine learning provides state-of-the art performance in image-based plant phenotyping. Cold Spring Harbor Laboratory.

This list was generated on Sat Aug 15 10:59:28 2020 UTC.