Characterisation of putative virulence factors in adherent-invasive Escherichia coli

Cogger-Ward, Robert (2020) Characterisation of putative virulence factors in adherent-invasive Escherichia coli. PhD thesis, University of Nottingham.

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Abstract

Crohn’s disease (CD) is a chronic inflammatory bowel disease. CD is driven by a synergy of predisposing genetic variants, diet, gut colonisation with a perturbed pro-inflammatory microbiome, and infection with CD-associated pathobionts, including Adherent-Invasive Escherichia coli (AIEC). AIEC is a non-diarrhoeagenic intestinal E. coli pathotype, the virulence of which is characterised by adhesion to and invasion of intestinal epithelial cells (IECs); intracellular replication within IECs and macrophages; flagella-mediated motility; and biofilm formation.

Preliminary evidence suggests the prototypical AIEC strain, LF82, mediates pathogenesis in some part via two uncharacterised Type VI Secretion Systems (T6SS). The T6SS may secrete anti-eukaryotic and anti-bacterial effectors and is implicated in host cytomodulation and niche establishment via inter-bacterial antagonism in several proteobacterial pathogens. This study therefore used phenotypic screening approaches to define the roles of the T6SS in host-AIEC interactions, and anti-bacterial competition. A high-throughput screen was also employed to identify putative anti-eukaryotic T6SS effectors. No evidence of a role for the T6SS in IEC invasion, intramacrophage replication, or anti-bacterial competition was found in this study. Intra-IEC replication could not be reliably assayed. However, a high-throughput screen identified four putative anti-eukaryotic T6SS effectors, which might conceivably modulate intra-IEC survival and intracellular replication in AIEC.

Prior work in the Huett lab identified a conserved hypothetical protein – LF82_314 – which promoted AIEC invasion of IECs. This study sought to validate this finding, and to characterise the role of LF82_314 in biofilm formation, motility, and host colonisation, using a Caenorhabditis elegans infection model. Bioinformatic, genetic, and proteomic characterisations of LF82_314 were also conducted. This study found LF82_314 mediates biofilm formation and C. elegans gut colonisation via flagella-mediated motility. Genetic and biochemical characterisations suggest LF82_314 may modulate motility by regulating anaerobiosis. LF82_314 is widespread in γ-proteobacterial pathogens. This study therefore found LF82_314 is a significant novel virulence factor, with consequence in both CD and other enteric infections.

Item Type: Thesis (University of Nottingham only) (PhD)
Supervisors: Huett, Alan
Keywords: Adherent invasive Escherichia coli; AIEC; Biofilm; Motility; Crohn's disease; bcmA; LF82_314
Subjects: Q Science > QR Microbiology
Faculties/Schools: UK Campuses > Faculty of Medicine and Health Sciences > School of Life Sciences
Item ID: 59803
Depositing User: Cogger-Ward, Robert
Date Deposited: 17 Jul 2020 04:40
Last Modified: 17 Jul 2020 04:40
URI: http://eprints.nottingham.ac.uk/id/eprint/59803

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