Infobiotics workbench: a P systems based tool for systems and synthetic biology

Blakes, Jonathan and Twycross, Jamie and Konur, Savas and Romero-Campero, Francisco Jose and Krasnogor, Natalio and Gheorghe, Marian (2014) Infobiotics workbench: a P systems based tool for systems and synthetic biology. In: Applications of membrane computing in systems and synthetic biology. Emergence, complexity and computation (7). Springer International Publishing, Cham, pp. 1-41. ISBN 978-3-319-03191-0

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This chapter gives an overview of an integrated software suite, the Infobiotics Workbench, which is based on a novel spatial discrete-stochastic P systems modelling framework. The Workbench incorporates three important features, simulation, model checking and optimisation. Its capability for building, analysing and optimising large spatially discrete and stochastic models of multicellular systems makes it a useful, coherent and comprehensive in silico tool in systems and synthetic biology research.

Item Type: Book Section
Additional Information: Date of acceptance is estimated.
Schools/Departments: University of Nottingham, UK > Faculty of Science > School of Computer Science
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Depositing User: Twycross, Jamie
Date Deposited: 19 Sep 2017 12:00
Last Modified: 27 Jun 2018 10:01

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